[Bioperl-l] Re:free energy of two RNA

[baev at imbb.forth.gr]

I have to calculate the free energy of binding between two RNA molecules (not 
for each individual RNA). But these program allowed only one sequence?! not 
two?


Quoting Chris Fields <cjfields at uiuc.edu>:

> There are Pise interfaces to the Vienna RNA package and mfold in 
> bioperl-run (I think), but I believe they rely on the web interface at 
> the Institut Pasteur.  You may want to check out the documentation in 
> CVS.
> 
> Do you want the free energy of binding between two RNA molecules or the 
> free energies for each individual RNA?  I'm a bit confused.  I think 
> that a program in the mfold package will do this.
> 
> On May 18, 2004, at 5:42 AM, baev at imbb.forth.gr wrote:
> 
> > Hello,
> > I have to calculate the free energy of binding of two RNA molecules. 
> > Is there
> > a module in BioPerl that I can use or module to external program?
> >
> > Thanks in advance!
> > Sincerely Yours Vesselin Baev.
> >
> >
> > -----------------
> > University of Plovidv
> > Biology Faculty
> > Cell Biology Lab
> > baev at pu.acad.bg
> >
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
> Chris Fields
> Postdoctoral Reseacher - Dept. of Biochemistry
> Laboratory of Dr. Robert Switzer
> University of Illinois at Urbana-Champaign
>