[Bioperl-l] AlignIO::clustalw bug

[David Arenillas]

There is a bug in the AlignIO::clustalw::next_aln method whereby it will not 
parse files in which the residue number trails the actual nucleotide 
sequence. i.e.

CLUSTAL W (1.82) multiple sequence alignment


mm4_dna         ------------------------------------------------------------
hg16_dna        TAAGTCCCCTAAAAGCCATAATTTTTATTATTCCTTTTTCTCTTTTTTCAATTCTATGAA 
60


mm4_dna         ------------------------------------------------------------
hg16_dna        TATGTATTATTTTAAAGTTATATTTTTCACACAGAGATGATGCTATATTACACCTTCCCT 
120