[Bioperl-l] remove gapped colums

luisa pugliese luisa.pugliese at safan-bioinformatics.it
Tue May 11 11:04:06 EDT 2004


Hi,
   I am new at bioperl and I am working on alignments. I am splitting a multiple alignment into several pairwise alignments and I would like to remove the columns in which there are gaps in all the sequences. Does anybody knows if a method exists doing this or a method finding the columns in which there are gaps in all the sequences similar gap_line that find the gaps present in any columns?
Thank you 
Luisa Pugliese
=============================
Luisa Pugliese, Ph.D.
luisa.pugliese at safan-bioinformatics.it
S.A.F.AN. BIOINFORMATICS
Corso Tazzoli 215/13 -10137 Torino
tel +39 011 3026230
cell. +39 333 6130644


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