[Bioperl-l] Protein IDs: GenPept and SwissProt

[Jason Stajich]

Though not every genpept (primary data) will have a sp id (curated data).

This file can give you the accession -> sp mapping for those which are
mapped.
ftp://ftp.expasy.ch/databases/swiss-prot/release/acindex.txt

-jason
On Wed, 5 May 2004, Jonathan Manning wrote:

> Hi All,
>
> Is there an easy way to relate/convert protein GenBank (GenPept) IDs to
> a swiss-prot accession? I thought maybe SeqHound could be useful there,
> but can't see what I need.
>
> Cheers,
>
> Jon
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu