[Bioperl-l] Skipping invalid entries in GenBank
Peter Jun
pjun at cc.ucsf.edu
Mon Mar 29 18:31:39 EST 2004
I'm trying to create a script that will take a list of sequence names, and
pull the fasta sequence. Occasionally, I will get an error message like
this when the sequence that I'm trying to retrieve doesn't exist:
------------- EXCEPTION -------------
MSG: WebDBSeqI Error - check query sequences!
STACK Bio::DB::WebDBSeqI::get_seq_stream
C:/Perl/site/lib/Bio/DB/WebDBSeqI.pm:476
STACK Bio::DB::NCBIHelper::get_Stream_by_query
C:/Perl/site/lib/Bio/DB/NCBIHelper.pm:249
STACK toplevel E:\perlprogs\pullseq\Search.pl:32
--------------------------------------
Anyway to get around this?
Thanks!
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