[Bioperl-l] Skipping invalid entries in GenBank

Peter Jun pjun at cc.ucsf.edu
Mon Mar 29 18:31:39 EST 2004

I'm trying to create a script that will take a list of sequence names, and
pull the fasta sequence.  Occasionally, I will get an error message like
this when the sequence that I'm trying to retrieve doesn't exist:

------------- EXCEPTION  -------------
MSG: WebDBSeqI Error - check query sequences!

STACK Bio::DB::WebDBSeqI::get_seq_stream
STACK Bio::DB::NCBIHelper::get_Stream_by_query
STACK toplevel E:\perlprogs\pullseq\Search.pl:32


Anyway to get around this?


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