[Bioperl-l] "strand" line in bl2seq output

Brian Osborne brian_osborne at cognia.com
Mon Mar 29 08:16:20 EST 2004


I think this is discussed in the FAQ,
http://bioperl.org/Core/Latest/faq.html#Q3.5, and in the SearchIO HOW TO.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Dominique Vlieghe
Sent: Monday, March 29, 2004 7:21 AM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] "strand" line in bl2seq output

Hello all,

I have a question regarding the parsing of bl2seq output (using
Bio::Tools::BPbl2seq). In the bl2seq output there is a line for strand
orientation (e.g. "Strand = Plus / Plus"). I looked at the modules that
parse this file, but I don't see where those lines are processed. Is
this correct? If it is, what's the alternative for getting this valuable



Save the Hubble petition: http://www.savethehubble.org
Dominique Vlieghe, Ph.D.,
Bioinformatics Core,
Department for Molecular Biomedical Research (DMBR)
VIB - Ghent University
'Fiers-Schell-Van Montagu' building
Technologiepark 927
B-9052 Ghent (Zwijnaarde), Belgium

Tel : +32-(0)9-33-13.693
Fax : +32-(0)9-33-13.609
email:dominique.vlieghe at dmbr.ugent.be

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