[Bioperl-l] IUB/IUPAC nucleic acid codes

Allen Day allenday at ucla.edu
Fri Mar 26 14:25:19 EST 2004

no, i was looking for this recently too.  in my own dev libs i've already
written the code that can go from concrete (ie, ATCG) sequence to
degenerate if you supply the degenerate letters you want to allow.  i have
some code that does what you ask too.  i'll commit it into bioperl when
it's a little more mature.

can you give your use case, possibly with an example of how you'd like to
use the api?


On Fri, 26 Mar 2004, Richard Rouse wrote:

> Does anyone know if bioperl has a tool that can generate all the possible
> sequence combinations from a sequence like this:
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