[Bioperl-l] Bio::AlignIO::po

[Matthew Betts]

Hi,

I've finally written the Bio::AlignIO:po module I mentioned way back in 
November. I'm unsure of the procedure for submitting it (I've looked at 
the FAQ). Should I just post it as an attachment to bioperl-l?

Also, I'm trying to think of some sensible tests, and have been looking at 
AlignIO.t. The ones in there mainly seem to test that a sequence read in 
from an example alignment has the correct name. Should I test more than 
that? All suggestions very welcome.

Thanks in advance for your help,

Matthew


On Thu, 13 Nov 2003, Jason Stajich wrote:

> One does not exist - would be happy for you to write one.
> AlignIO::clustalw or fasta would be good templates.
> An AlignIO pir parser wouldn't be too bad either if you get into it.
> 
> -jason
> On Thu, 13 Nov 2003, Matthew Betts wrote:
> 
> 
> >
> > Hei,
> >
> > Does anyone have a PO format reader for AlignIO? This is the native output
> > format for POA. It can also output in pir or clustalw, so it's not a big
> > problem. But I'd quite like to try to try my hand at writing the parser if
> > one doesn't exist already...
> >
> > Thanks,
> >
> > Matthew
> >
> >
> >
> 
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
> 

-- 
Matthew Betts, mailto:matthew.betts at ii.uib.no
Phone: (+47) 55 58 40 22, Fax: (+47) 55 58 42 95
CBU, BCCS, HiB, UNIFOB / Universitetet i Bergen
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