[Bioperl-l] retrieving genomic sequence

[Jason Stajich]

See Bio::DB::Fasta for a fast and easy way to do this for a local
copy of the genome you are interested in.  Bio::DB::GFF will also do this
for you if you want to load the data into a relational database.

-jason
On Fri, 19 Mar 2004, gabriele bucci wrote:

> Hi everibody.
> Does anyone know if I could use BioPerl for retrieving DNA string from
> multiple specified genomic region?
> I mean, eg: from chromosome 1 starting 1598675 to 1689000, from chr 2 100....
> to 101... ecc.
> I'm pretty sure it's possible but as a beginners as I'm I can't find the way
> trough the various perldocs....
> Thanks to everybody in advance.
>
> Gabriele
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu