[Bioperl-l] Bio::TreeIO::svggraph problems
Vamsi
vamsi at warta.bio.psu.edu
Thu Mar 18 13:05:54 EST 2004
Hi,
I am trying to use the Bio::TreeIO::svggraph module to
display a newick format tree. Here is the tree:
(a,b);
and the code:
-------------------------------------------
use Bio::TreeIO;
my $in = new Bio::TreeIO(-file => $ARGV[0], -format => 'newick');
my $out = new Bio::TreeIO(-file => ">$ARGV[1]", -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
-------------------------------------------
(which is from the documentation for Bio::TreeIO::svggraph)
I have all the required SVG modules installed. But, I get the error
Can't locate object method "new" via package "SVG::Graph::Glyph::tree" at
/usr/perl5/site_perl/5.005/SVG/Graph/Frame.pm line 117, <GEN0> chunk 1.
Any suggestions?
Thanks,
Vamsi
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