[Bioperl-l] determining orthologs...

Paulo Almeida paulo.david at netvisao.pt
Mon Mar 15 18:05:13 EST 2004

For new genes, maybe running a remote blast and setting 'expect', or 
'percent identity', and 'minimum length' cut-offs (only consider a 
possible ortholog if it spans, say, 70% of the query sequence).

-Paulo Almeida

Bob Freeman wrote:

> What are BioPerl developers doing at present to determine putative 
> orthologs of a gene? BLINK? Unigene? LocusLink? And what about for 
> new/hypothetical genes?
> Tx,
> Bob

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