[Bioperl-l] seeking advice about setting up a local GenBank mirror
Michael Cariaso
Cariaso at yahoo.com
Wed Mar 10 13:59:52 EST 2004
This is not a strictly bioperl question so I'll take non-bioperl related
answers offline.
I need to setup a local mirror of most of GenBank (I don't need the ESTs
or indexes). There seems to be several ways to achieve this, but no
single definitive solution. I'd like to keep the files in their gzipped
form. And my copies don't need to be too fresh, up to a week old should
be acceptable. Can anyone recommend, or warn me away from *ANY* of these
approaches.
Is there a suitable part of bioperl?
Has anyone used BioMirror.pm?
http://www.bio-mirror.net/biomirror/software/biomirror/biomir-help.txt
What about ftpmirror?
http://noc.intec.co.jp/ftpmirror.html
What about mirror? (It's hard to find a current copy, the word is too
common. Is anyone still using this?)
http://www.etsimo.uniovi.es/mirror/mirror.html
I'm about 10 miles away from the NIH, and not connected to the I2
network. Is there any reason to prefer mirroring off of
ftp://bio-mirror.net/biomirror//genbank/
versus
ftp://ftp.ncbi.nih.gov/genbank/
--
Michael Cariaso
http://www.cariaso.com
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