[Bioperl-l] Printing string fragments?
Gyoergy Abrusan
abrusan at mpil-ploen.mpg.de
Wed Mar 10 07:32:25 EST 2004
Dear All,
I would like to ask how can I print out certain fragments of strings.
my data are in the format:
>seqname1#uninteresting_information
ATCGTACGTGCGAGACGT......
>seqname2#.....
ATGTCATG....
I wrote a script that makes some statistics on the nucleotide sequences.
I would like to print the results out as:
seqname1 results
seqname2 results
at the moment I can print them out only as:
>seqname1#uninteresting_information results
>seqname2#uninteresting_information results
Because the scriprt prints out the entire seqname-sting.
How can I print out parts of a string, say from symbol '>' to
symbol '#'?
Thanking you in advance.
Kind regards,
Gyorgy Abrusan,
Max-Planck Institute for Limnology,
Ploen, Germany
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