[Bioperl-l] biosql error
박준형
jhpark98 at dreamwiz.com
Mon Mar 8 23:40:37 EST 2004
Dear Bioperl Experts
I have some problem to perform biosql database update like this.
Until upgrade perl 5.8.3, I had been used load_seqdatabase.pl script to
update genbank file into biosql database.
I don’t know what is the problem.
Is there some method to fix these bugs?
------------- EXCEPTION -------------
MSG: failed to open connection:
STACK Bio::DB::DBI::base::new_connection /usr/local/lib/perl5/site_perl/5.8.
3//Bio/DB/DBI/base.pm:249
STACK Bio::DB::DBI::base::get_connection /usr/local/lib/perl5/site_perl/5.8.
3//Bio/DB/DBI/base.pm:209
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::dbh
/usr/local/lib/perl5/site_perl/5.8.3//Bio/DB/BioSQL/BasePersistenceAdaptor.p
m:1443
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::rollback
/usr/local/lib/perl5/site_perl/5.8.3//Bio/DB/BioSQL/BasePersistenceAdaptor.p
m:1362
STACK toplevel load_seqdatabase.pl:515
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