[Bioperl-l] biosql error

박준형 jhpark98 at dreamwiz.com
Mon Mar 8 23:40:37 EST 2004

Dear Bioperl Experts

I have some problem to perform biosql database update like this.

Until upgrade perl 5.8.3, I had been used load_seqdatabase.pl script to
update genbank file into biosql database.

I don’t know what is the problem. 

Is there some method to fix these bugs?


------------- EXCEPTION  -------------

MSG: failed to open connection: 

STACK Bio::DB::DBI::base::new_connection /usr/local/lib/perl5/site_perl/5.8.

STACK Bio::DB::DBI::base::get_connection /usr/local/lib/perl5/site_perl/5.8.

STACK Bio::DB::BioSQL::BasePersistenceAdaptor::dbh

STACK Bio::DB::BioSQL::BasePersistenceAdaptor::rollback

STACK toplevel load_seqdatabase.pl:515

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