[Bioperl-l] Can't locate object method "start" via package
"Bio::Seq::RichSeq"
=?gb2312?B?zfXqySwgU2FuIFdhbmc=?=
bsman at tom.com
Sat Mar 6 14:00:34 EST 2004
Dear bioperl-l:
The code
------
#!/usr/bin/perl
use Bio::Tools::SiRNA;
use Bio::Seq::RichSeq;
use strict;
my $seq='ATGGGGGTGGTGGTACCCTTTATCGGAAATTTACCTGCTGCACAGGAATGTTTTCTGGTGT';
#$seq=~s/T/U/;
my $bio_rich_seq = Bio::Seq::RichSeq->new( -seq =>$seq , -start=>1, -end => 100);
$bio_rich_seq->molecule('mRNA');
my $sirna_designer = Bio::Tools::SiRNA->new( -target => $bio_rich_seq );
my @pairs = $sirna_designer->design;
foreach my $pair (@pairs) {
my $sense_oligo_sequence = $pair->sense->seq;
print $sense_oligo_sequence;
my $antisense_oligo_sequence = $pair->antisense->seq;
# print out results
#print join ("\t", $pair->start, $pair->end, $pair->rank, $sense_oligo_sequence, $antisense_oligo_sequence), "\n";
}
----
Can't locate object method "start" via package "Bio::Seq::RichSeq" (perhaps you forgot to load "Bio::Seq::RichSeq"?) at D:/Tools/perl/site/lib/Bio/Tools/SiRNA.pm line 263.
Best Regards!
Yours sincerely
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡ÍõêÉ, San Wang
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡bsman at tom.com
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡2004-03-07
,-,-. ,-,-. ,-,-. ,-,-. ,-
/ / \ \ / / \ \ / / \ \ / / \ \ / /
\ \ / / \ \ / / \ \ / / \ \ / /
`-'-' `-'-' `-'-' `-'-'
San Wang
Dr. Student
Bioinformatics and Gene Network Research Group
Zhejiang University
P.R.China
Address:
Room 415# ,Bio-technology Institute,
Zhejiang University,
Kaixuan Road 268# Hangzhou
Zhejiang, P.R.China
310027
Tel:
0086-571-86892051
Fax:
0086-571-86961525
E-mail:
bsman at 163.com
Website:
http://www.estarray.org
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