[Bioperl-l] load_seqdatabase.pl problem

[Eric Bazin]

Hi.

I try to import embl sequence datas in a biosql schema using the perl
script "load_seqdatabase.pl". Previously I loaded without any problem
the taxon schema from the NCBI with load_ncbi_taxonomy.pl. Can anybody give
me a help for this?

This is what I received:

bash#./load_seqdatabase.pl --dbname polymorphix --format embl
/home/eric/polybase.dat

Could not store AB022832:
------------- EXCEPTION  -------------
MSG: Unique key query in Bio::DB::BioSQL::SpeciesAdaptor returned 3 rows
instead of 1. Query was [name_class="scie
ntific name",binomial="Aspergillus oryzae"]
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/Ba
sePersistenceAdaptor.pm:960
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/Bas
ePersistenceAdaptor.pm:856
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::create
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/BasePersistence
Adaptor.pm:183
STACK Bio::DB::Persistent::PersistentObject::create
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/Persistent/PersistentObj
ect.pm:243
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::create
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/BasePersistence
Adaptor.pm:170
[root at thaler biosql]# :BasePersistenceAdaptor::store
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/BasePersistenceA
daptor.pm:253
STACK Bio::DB::Persistent::PersistentObject::store
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/Persistent/PersistentObje
ct.pm:270
STACK (eval) ./load_seqdatabase.pl:517
STACK toplevel ./load_seqdatabase.pl:500

--------------------------------------

Thanks a lot

Eric bazin