[Bioperl-l] downlaoding pdb files

[Ian Donaldson]

Hi Luisa:

You can use a SeqHound remote-API call to retrieve structures in PDB
flat-file format.

The call is SHoundGetPDB3D.


Documentation for this call can be found at 
http://www.blueprint.org/seqhound/api_help/apifunctslist.html

The SeqHound Perl module (version 2.5) can be down-loaded from 
http://prdownloads.sourceforge.net/slritools/seqhound.perl.2.5.tar.gz?downlo
ad.


Lots more documentation is available at 
http://www.blueprint.org/seqhound/api_help/seqhound_help_guides.html
if you've never used it before.


Let me know if you have any problems.

Best

Ian


----- Original Message ----- 
From: "luisa pugliese" <luisa.pugliese at safan-bioinformatics.it>
To: <Bioperl-l at portal.open-bio.org>
Sent: Thursday, June 03, 2004 6:11 AM
Subject: [Bioperl-l] downlaoding pdb files


> Hi bioperlers,
>     I looked at the DB modules and I didn't find anything related to the
> PDB. Does anyody knows if there is a way to automatically download pdb
files
> from the PDB within bioperl, as it is possible to do for sequences from
> genebank?
> Thank you to all
> Luisa
> =============================
> Luisa Pugliese, Ph.D.
> luisa.pugliese at safan-bioinformatics.it
> S.A.F.AN. BIOINFORMATICS
> Corso Tazzoli 215/13 -10137 Torino - ITALY
> tel +39 011 3026230
> cell. +39 333 6130644
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>

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