[Bioperl-l] Bio::SearchIO

davila davila at ioc.fiocruz.br
Tue Jul 27 08:52:10 EDT 2004


I was using the last year a Blast parser with the following lines:
 
       $query_start=$hsp->start('query');
       $query_end=$hsp->end('query');
       $hit_start=$hsp->start('hit');
       $hit_end=$hsp->end('hit');

however it is no longer working and I had to comment them in order to have the parser working. If there were any changes, how I could now catch the "query_start", "query_end", "hit_start" and "hit_end" from the Blast results ?
 
Thanks in advance, Alberto
 



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