[Bioperl-l] bioperl installation
Xiang Deng
xiang.deng at duke.edu
Thu Jul 22 10:00:55 EDT 2004
To whom it may concern,
I am trying to install bioperl locally under my peronal folder. The core
modules were successfully installed. I ran through a simple perl script to
use bio::perl or bio::seq without complain. but I got problem with
installing bioperl-ext-1.4.
When I installed core modules I used this
>perl Makefile.PL LIB=/my_local_directory/
My first question is whether or not I have to use the same way to deal
with ext modules too and I can use the same directory or a separate one.
Actually I tried both and both failed with error message as follows:
mendel 207% perl Makefile.PL
Checking if your kit is complete...
Looks good
Writing Makefile for Bio::Ext::Align
ERROR from evaluation of
/v0/users/deng0007/my_bioperl/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL:
Can't locate Inline/MakeMaker.pm in @INC (@INC contains:
/usr/local/lib/perl5/5.6.1/IP27-irix /usr/local/lib/perl5/5.6.1
/usr/local/lib/perl5/site_perl/5.6.1/IP27-irix
/usr/local/lib/perl5/site_perl/5.6.1 /usr/local/lib/perl5/site_perl
/v0/users/deng0007/my_bioperl/bioperl-ext-1.4 .) at ./Makefile.PL line 1.
BEGIN failed--compilation aborted at ./Makefile.PL line 1.
could you please let me know what I did wrong or miss in there? thanks a
lot,
Xiang
Department of Pharmacology and Cancer Biology
Duke University Medical Center
Durham, NC 27710
Phone: 919-4792339
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