[Bioperl-l] compiling ext-1.4 on solaris 2.9

[Aaron J. Mackey]

1. get a fresh, clean copy
2. cd into Bio/Ext (bypasses building SeqIO/staden)
3. do "perl Makefile.PL; make; make test" and send me the (voluminous) 
output ...

Thanks,

-Aaron

On Jul 21, 2004, at 11:08 PM, Michal Kurowski wrote:

> Hi,
>
> It seems Bioperl-ext-1.4 is not actually easy to compile on Solaris.
> I must say it is a 64-bit, iThread Perl but still ;-)
> Other XS modules were built with no problems.
>
> I'm interested in Align module only. I followed the instructions and
> compilation went OK. "make test" is not so easy ...
>
>
> PERL_DL_NONLAZY=1 /usr/local/bin/perl "-Iblib/lib" "-Iblib/arch" 
> test.pl
> 1..2
> Can't load 'blib/arch/auto/Bio/Ext/Align/Align.so' for module 
> Bio::Ext::Align:
> ld.so.1: /usr/local/bin/perl: fatal: relocation error:
> file blib/arch/auto/Bio/Ext/Align/Align.so:
> symbol bp_sw_error_on: referenced symbol not found
> at 
> /usr/local/lib/perl5/5.8.1/sun4-solaris-thread-multi-64/DynaLoader.pm
> line 229. at test.pl line 10
>
> My "perl -V" output is given below.
>
> I hope someone has seen this before ...
>
>
> -- 
> Michal Kurowski
> <mkur at poczta.gazeta.pl>
>
>
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--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697