[Bioperl-l] Flat databases

[Lincoln Stein]

By the way, I advise that you use the Berkeley DB interface, if 
possible.  The "flat" indexing scheme is quite slow.

Lincoln

On Wednesday 14 July 2004 05:35 pm, S.Paul wrote:
> Hi Everybody:
>
> I was trying to follow the HowTo for Flat databases and try to run
> the following command: bp_bioflat_index.pl -c -l
> c:\research\perl\genbank -d g
> enbank -i flat -f genbank data/*.gbk
>
> I installed the bioflat_index.pls script and then tried to run the
> above command but am getting the following error message:
>
> *******************************************************************
>***
>
> C:\research\perl\genbank>bp_bioflat_index.pl -c -l
> c:\research\perl\genbank -d g enbank -i flat -f genbank data/*.gbk
>
> ------------- EXCEPTION  -------------
> MSG: Can't locate Bio/DB/Flat/Flat/genbank.pm in @INC (@INC
> contains: C:/Perl/li b C:/Perl/site/lib .) at (eval 4) line 2.
> BEGIN failed--compilation aborted at (eval 4) line 2.
>
> STACK Bio::DB::Flat::new C:/Perl/site/lib/Bio/DB/Flat.pm:140
> STACK toplevel C:\research\perl\genbank\bp_bioflat_index.pl:89
>
> *******************************************************************
>**********
>
> Thanks in advance for the help
>
> Sujoy
>
>
>
> Sujoy Paul, PRISE Centre, UniS, s.paul at surrey.ac.uk

-- 
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724