[Bioperl-l] new objects

[Jason Stajich]

I added Bio::Tools::Run::Alignment::Muscle for running Bob Edgar's MUSCLE
multiple sequence alignment application.  The wrapper module is bare-bones
and needs some more work to support all the features in the app.  I'd love
for someone else to help with that.

I also added Jamie Hatfield and Cari Soderlund's code for
parsing and manipulating FPC mapping data.  This is in
Bio::Map::(Clone|Contig|FPCMarker) and Bio::MapIO::fpc.

-jason
--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu