[Bioperl-l] Help with promoter analysis

[gtg974p at mail.gatech.edu]

Hi all,
I am trying to find all the Transcriptional Factor binding sites using the TFBS

perl modules and TRANSFAC matrices. When I tried running the code in the whole 
chromosome it says the sequence too long. I tried changing the 
#define SEQLEN 1000000 
in the pwm_search.h to
#define SEQLEN 100000000

and the sequence length is lesser than this. But it still throws me the same 
error.
Can someone help me with this?
Thanks,
Subadhra