[Bioperl-l] seting the location of tempdir

Jason Stajich jason at cgt.duhs.duke.edu
Wed Jan 21 20:44:23 EST 2004


$ENV{TEMPDIR} or ENV{TMPDIR}  (TEMPDIR is preferred env variable)

See Bio::Root::IO where all the tempdir/tempfile code is located.

-jason
On Wed, 21 Jan 2004, Nathan Haigh wrote:

> Hi,
> I was wondering if there is a way to set the tempdir for bioperl?
> I am writing some scripts involving clustalw.pm and other modules, and I
> was wondering if there is a way to set the tempdir for bioperl, so that it
> is used for creating temp dirs and files.
>
> Thanks
> Nathan
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu


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