[Bioperl-l] Problem Bioperl::SearchIO

[Jason Stajich]

What does the file fichier2.bin look like?  If you replace it with
fichier1.bin does it work, what type of error message do you get, etc.

It is only possible to help you if you provide more information.

On Tue, 13 Jan 2004, Laubin BASTIEN wrote:

>
> Hello
>
> I have a problem when I try to read 2 blast file :
>
> $in = new Bio::SearchIO (-format => 'blast', -file => 'fichier1.bln');
> while ($result=$in->next_result)
> {
> 	...
> }
>
> $in2 = new Bio::SearchIO (-format => 'blast', -file => 'fichier2.bln');
> print "SPY 1";
> while ($result2=$in2->next_result)
> {
> 	print "SPY 2";
> 	...
> }
>
> There's no problem with the first blast file but in the second SPY1 is
> written but not SPY2.
>
> What's the problem ?
>
> Thank you for your help
>
> Bastien Laubin
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu