[Bioperl-l] swisprot.dat

[perin]

Hi Peter,

We had a similar problem few month ago (access to Arabidopsis thaliana 
proteome annotation released in a swiss-prot format by EBI). We solved 
it using Biosql and a set of  scripts accessing directly to Bioperl 
objects.

Take a look at:

http://cvs.bioperl.org/cgi-bin/viewcvs/viewcvs.cgi/biosql-schema/INSTALL?cvsroot=bioperl&rev=1.2

After, you will have to wrote scripts to access Bioperl objects directly :
see a set of examples at:

 http://www.open-bio.org/bosc2003/slides/Persistent_Bioperl_BOSC03.pdf


Christophe Perin