[Bioperl-l] Trouble installing bioperl-ext-1.4

[Jason Stajich]

Hey Barry!
 You need to have installed Inline::C first.

 You don't need bioperl-ext unless you want the specialized stuff in there
(a smith-waterman implementation and access to the staden io library for
 reading in trace files directly through perl).

-jason
On Tue, 6 Jan 2004, Barry Moore wrote:

>
> I'm installing bioperl 1.4 on my linux machine (RedHat 9.0, Perl 5.8).
> Bioperl-1.4 (the core) and bioperl-run-1.4 installed fine.  I get the
> following errors when trying to install bioperl-ext-1.4:
>
> [root at Tatshenshini bioperl-ext-1.4]# perl Makefile.PL
> Checking if your kit is complete...
> Looks good
> Writing Makefile for Bio::Ext::Align
> ERROR from evaluation of
> /home/bmoore/bioperl-ext-1.4/Bio/SeqIO/staden/Makefile.PL: Can't locate
> Inline/MakeMaker.pm in @INC
> (@INC contains: /usr/lib/perl5/5.8.0/i386-linux-thread-multi
> /usr/lib/perl5/5.8.0
> /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
> /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl
> /usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
> /home/bmoore/bioperl-ext-1.4 .) at ./Makefile.PL line 1.
> BEGIN failed--compilation aborted at ./Makefile.PL line 1.
> [root at Tatshenshini bioperl-ext-1.4]#
>
> I'm a bit linux challenged so any pointers, no matter how remedial, will
> be greatly appreciated.
>
> Barry Moore
> Dept. Human Genetics
> University of Utah
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu