[Bioperl-l] GCG and Perl

[Catherine Letondal]

On Tue, Jan 06, 2004 at 05:30:04PM +0100, Laurence Amilhat wrote:
> 
> 
> Hi everyone,
> 
> I would like to run GCG programs in a Perl script (such as bestfit), but I 
> cannot make it work.
> I know that there are BioPerl modules to run EMBOSS program, but I don't 
> have Emboos installed in my system.
> Does anyone have an idea?
> 
> Thank you,
> 
> Sincerely,
> 
> Laurence
> 

If you don't want to - or cannot - install EMBOSS locally, you can use
the Bio::Tools::Run Pise modules.
See: http://www.pasteur.fr/recherche/unites/sis/Pise/#pisebioperl
(there is an example with needle, another EMBOSS program).

Do not hesitate to ask for additional information.

-- 
Catherine Letondal -- Pasteur Institute Computing Center