[Bioperl-l] Tm calculation

[Sebastian Bassi]

Barry Moore wrote:

> Sebastian,
> I would say that your first oligo (AAACCCTAGGGTTT) is complimentary, but 

I've been reading the paper and searching the net for an implementation 
of the Santalucia formulae. I found two interesting things:
1- Santalucia's lab has a webpage with a Tm calculator server 
(http://ozone2.chem.wayne.edu/Hyther/hytherm1main.html). The code can't 
be accessed since its a server side CGI script.
2- I found another web page that returns ALMOST the same results that 
Santalucia page (I think the very small difference is just because of 
round errors). But this one, it has it's code in JS, so the code is 
available.
Take a look here:
http://www.promega.com/biomath/calc11.htm
The code is here:
http://www.promega.com/biomath/oligotm.js
If this implementation is OK, we could just translate it to perl/python.
I am working on that right now.

-- 
Best regards,

//=\ Sebastian Bassi - Diplomado en Ciencia y Tecnologia, UNQ   //=\
\=// IT Manager Advanta Seeds - Balcarce Research Center -      \=//
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