[Bioperl-l] Subject length using BPlite.pm

[Jason Stajich]

BTW SearchIO is the only supported Blast parser so I will always suggest
moving to SearchIO::blast for your parsing needs....

But I don't think Ian/Peter put a method call in there so you have to use
$sbjct->{'LENGTH'} where sbjct came from the nextSbjct call like:

  use Bio::Tools::BPlite;
  my $report = new Bio::Tools::BPlite(-fh=>\*STDIN);
  while(my $sbjct = $report->nextSbjct) {

  }


-jason
On Thu, 19 Feb 2004, Adam Witney wrote:

>
> Hi,
>
> I am using BPlite.pm to parse a BLAST output, is it possible to get the
> Subject length? (that¹s the length of the whole subject sequence, not just
> the part involved in the hsp)
>
> Thanks for any help
>
> Adam
>
>
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu