[Bioperl-l] searchio scripts

[Jason Stajich]

presumably the report in blastreport has a hit which is better than the
signif cutoff of 0.1

my $in     = Bio::SearchIO->new( -format => 'blast',
                                 -signif => 0.1,
                                 -verbose=> 0 );



-jason
On Tue, 17 Feb 2004, Richard Rouse wrote:

> I recent installed bioperl-1.4 and am having problems with the blast report
> parsers in /examples/searchio/
>
>
> When I run:
> perl hitwriter.pl blastreport
> I get:
>
> Using SearchIO->new()
>
> 0 Blast report(s) processed.
> Output sent to file: >hitwriter.out
>
> I get the same result with rawwriter.pl, hspwriter.pl and custom_writer.pl
> although the htmlwriter.pl and the blast_example.pl work fine.
>
> Has anyone else encountered this problem and figured out how to fix it?
>
> Thanks,
>
> Richard
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu