[Bioperl-l] Strangeness in bioperl-1.4::Bio::DB::GFF::Segment...?

[Lincoln Stein]

The class of the gene sequence has changed.  You'll have to get it 
this way:

	$panelSeg= $db->segment(CDS => 'AH6.5')

Lincoln

On Thursday 12 February 2004 08:30 pm, Philip MacMenamin wrote:
> Hi,
>
> So I have WS118 SQLdb running here, and I run
> select * from fattribute where gname = 'AH6.5';
> and I get some stuff returned.
>
> So, if I run (via perl)
> my $panelSeg = $db->segment('AH6');
> I get stuff returned (ie all of the AH's, like I'd expect).
>
> However, if I run:
> my $panelSeg = $db->segment('AH6.5');
> I get nothing returned.
>
> This seems odd to me...
>
> I am of course doomed to figure out why as soon as I post this
> though :)
>
> Philip
>
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-- 
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724