[Bioperl-l] Bioperl-db make test failures

[Adam Witney]

Hi,

I am trying out bioperl-db and biosql. I downloaded both from CVS and
installed the biosql schema ok. However I have some test failures with
bioperl-db:

t/cluster.......ok 5/160Use of uninitialized value in join or string at
blib/lib/Bio/DB/BioSQL/BaseDriver.pm line 1835, <GEN0> line 1.

-------------------- WARNING ---------------------
MSG: insert in Bio::DB::BioSQL::BiosequenceAdaptor (driver) failed, values
were ("","0","dna","") FKs (2)
ERROR:  invalid input syntax for integer: ""

... And

t/species.......ok 68/65
------------- EXCEPTION  -------------
MSG: create: object (Bio::Species) failed to insert or to be found by unique
key
STACK Bio::DB::BioSQL::BasePersistenceAdaptor::create
blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:207
STACK Bio::DB::Persistent::PersistentObject::create
blib/lib/Bio/DB/Persistent/PersistentObject.pm:243
STACK toplevel t/species.t:76

Are these known problems or have I missed something?

Thanks

Adam


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