[Bioperl-l] protein networks

[Richard Adams]

Hi,
I was wondering if anyone has written or is writing any modules to deal 
with protein interaction networks?

E.g., to read in from a DIP flatfile or XML, or other such interaction 
information source
and to have methods such as

get_number_of_interactors()
get_interactor_ids()
clustering_coefficient()
path_length(from, to)
degree()
mean_path_length().

etc.


Richard

-- 
Dr Richard Adams,
Psychiatric Genetics Group,
Medical Genetics,
Molecular Medicine Centre,
Western General Hospital,
Crewe Rd West,
Edinburgh UK
EH4 2XU

Tel: 44 131 651 1084
richard.adams at ed.ac.uk