[Bioperl-l] Uniprot
Sebastien Moretti
Sebastien.Moretti at igs.cnrs-mrs.fr
Tue Feb 3 08:49:02 EST 2004
Hello
Is there a BioPerl module to send a request to UniProt db ?
My script send a request to Swissprot :
#!/usr/bin/perl
use strict;
use Bio::DB::SwissProt;
use Bio::SeqIO;
my $acc=$ARGV[0];
my $gb = new Bio::DB::SwissProt;
my $stream = $gb->get_Seq_by_acc($acc);
my $out=Bio::SeqIO->new(-format=>'swiss');
my $result=$out->write_seq($stream);
$result =~ s/^1.*$//;
print $result;
exit;
But how can I do the same with UniProt ?
Thanks
--
Sebastien MORETTI
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex 20, FRANCE
tel. 04 91 16 44 55 - 06 61 88 59 00
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