[Bioperl-l] Fwd: Bioperl 1.4.0(BUG)

Paulo Almeida paulo.david at netvisao.pt
Tue Dec 21 16:11:29 EST 2004


This code works for me:

use Bio::DB::GenBank;
$gb = new Bio::DB::GenBank;
$seq = $gb->get_Seq_by_acc('AE000440');
print $seq->description;


I don't know if I'm missing something. In the first e-mail you said you 
were using Bio::DB::Genbank, but I don't think there is a get_Sequence 
method there?

>     Jason,
>     the accession number is: AE000440 (Escheriachia coli k-12 MG1655
>     section 330 of
>     400 of the complete genome).
>     The program code:
>     use Bio::Perl;
>     get_Sequence('Genbank','AE000440');
>     the problem is on this method (get_Sequence).I'm not using the
>     protrein, i'm
>     using the nucleotide.
>     Madalena

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