[Bioperl-l] Fwd: Bioperl 1.4.0(BUG)
Paulo Almeida
paulo.david at netvisao.pt
Tue Dec 21 16:11:29 EST 2004
Madalena,
This code works for me:
use Bio::DB::GenBank;
$gb = new Bio::DB::GenBank;
$seq = $gb->get_Seq_by_acc('AE000440');
print $seq->description;
-Paulo
I don't know if I'm missing something. In the first e-mail you said you
were using Bio::DB::Genbank, but I don't think there is a get_Sequence
method there?
> Jason,
>
> the accession number is: AE000440 (Escheriachia coli k-12 MG1655
> section 330 of
> 400 of the complete genome).
> The program code:
> use Bio::Perl;
> get_Sequence('Genbank','AE000440');
> the problem is on this method (get_Sequence).I'm not using the
> protrein, i'm
> using the nucleotide.
>
> Madalena
>
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