[Bioperl-l] Bio::SeqIO::staden::read problem

[Aaron J. Mackey]

This error crops up when, in fact, bioperl-ext hasn't been fully, 
successfully installed (at least not in your site_perl/5.8.0).  If you 
do not need Bio::SeqIO::staden::read functionality, I suggest removing 
that part of the installation tree.

-Aaron

On Dec 16, 2004, at 1:21 AM, xuying wrote:

> hi all:
> I have problem with running demo scripts in bptutorial.pl
>
> [xuying at guyver-1 bioperl-1.4]$ perl -w bptutorial.pl 0
> The extension 'Bio::SeqIO::staden::read' is not properly installed in 
> path:
>   '/usr/lib/perl5/site_perl/5.8.0'
>
> If this is a CPAN/distributed module, you may need to reinstall it on 
> your
> system.
>
> To allow Inline to compile the module in a temporary cache, simply 
> remove the
> Inline config option 'VERSION=' from the Bio::SeqIO::staden::read 
> module.
>
>  at bptutorial.pl line 0
> INIT failed--call queue aborted, <DATA> line 1.
>
> I have installed io_lib in /usr/local/lib/ and installed bioperl-ext 
> successful.
> is there any argument i should change?
>
> 　　　　　　　　xuying
> 　　　　　　　　xuying at sibs.ac.cn
> 　　　　　　　　　　2004-12-16
>
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>
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697