[Bioperl-l] [EMBL reformatter problem with large acc_number]

simon andrews (BI) simon.andrews at bbsrc.ac.uk
Wed Dec 15 04:29:58 EST 2004

On 15 Dec 2004, at 08:36, Sebastien Moretti wrote:

> Hello,
> I use bioperl 1.4 on linux OS.
> I try to enhance some of my EMBL flat files with the standard EMBL 
> reformatter
> of BioPerl:
> But some of my files have large accession number, like ensEMBL 
> accession
> number, and my ID lines look like that:
> 	ID   ENSG00000156345standard; genomic DNA; UNK; 17425 BP.
> So, I would like to change this and to add blank spaces before 
> 'standard;'.

This has been discussed on the list previously and there is a patch 
waiting in bugzilla to sort out this behaviour


A small change to EMBL.pm should have you on your way without having to 
change any of your code.

Simon Andrews PhD
Bioinformatics Dept.
The Babraham Institute

simon.andrews at bbsrc.ac.uk
+44 (0) 1223 496463

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