[Bioperl-l] Parsing TGICL-CAP3 ACE result files

[Marc Logghe]

> There is already a Bio::Assembly::IO::ace file in the 
> Bioperl-1.4 distribution,
> but it is not the same as the one you have sent. Actually, 
> your ace.pm seems
> not to be as phrap-oriented as the other one. For example, 
> when searching for
No it is not the same, indeed. It is an old version based on ace.pm from the bioperl release almost 2 years ago.
I made few adaptations so that the TGICL generated ace files could be parsed.
I did not want to commit the code because I did not have phrap data (or other data) to check whether I broke anything or not.
Hope it still works within the environment of new bioperl.
Cheers,
Marc