[Bioperl-l] Getting query start and end from blast table report

[Jason Stajich]

Should work - that's the whole point of the parser - you need to 
provide some example code + version of Bioperl so we can follow along 
at home.
The standard, Result -> Hit -> HSP methodology is what you should be 
using.

-jason
On Dec 13, 2004, at 8:07 AM, michael watson ((IAH-C)) wrote:

> Hi
>
> How do you access the start and end of hits parsed using SearchIO and
> the "blasttable" format option?
>
>> From the docs, as far as I can see, hit objects parsed this way do not
> have HSP objects, but it is only hsp objects that have start and end
> methods...
>
> Anyone help?
>
> Mick
>
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--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/