plastid genetic code (was: [Bioperl-l] BioSQL: loading large sequence
records, and taxon parsing)
wfischer at uts.cc.utexas.edu
Thu Jun 19 11:16:07 EDT 2003
On Wednesday, June 18, 2003, at 07:21 PM, Hilmar Lapp (hlapp at gnf.org)
> On Tuesday, June 17, 2003, at 05:46 PM, Xiaoying Lin wrote:
>> 2. In the taxon table, there is a column 'mito_genetic_code'
>> Have people thought about genetic code for plastid genome, such as
> The columns are straight from the NCBI taxon download ... there is no
> plastid_genetic_code in there, can't explain why. Mind asking NCBI?
Plastids (unlike most mitochondria) use the universal code.
Some apparent exceptions were later found to be due to
post-transcriptional mRNA editing.
Will Fischer wfischer at uts.cc.utexas.edu
University of Texas at Austin Lab Ph.: 512-232-7114
Integrative Biology Lab Fax: 512-471-3878
1 University Station C0930
Austin, TX 78712-0253
More information about the Bioperl-l