[Bioperl-l] UCSC database -> GFF

[Lincoln Stein]

Where did that come from?  I was just talking with Mummi about how badly we 
need this and how difficult it will be to do it right.

Lincoln

On Tuesday 17 June 2003 02:07 pm, Jason Stajich wrote:
> Does core/scripts/Bio-DB-GFF/load_ucsc.pl work for you?
>
> On Tue, 17 Jun 2003, Paul Edlefsen wrote:
> > The Generic Genome Browser comes with many helpful scripts for
> > converting various data sources into GFF format.  I am wondering if
> > anyone in the bioperl community has written one for the UCSC data, as is
> > available at ftp://genome.cse.ucsc.edu/goldenPath/10april2003/database
> > and described at http://genome.ucsc.edu/goldenPath/gbdDescriptions.html
> > -- I noticed that  Allen Day wrote some handy aggregators for that data
> > such as Bio::DB::GFF::ucsc_genscan, so I wanted to check before I start
> > writing Generic-Genome-Browser/bin/process_ucsc.PLS.
> >
> > Thanks,
> >
> >   :Paul

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein at cshl.org			                  Cold Spring Harbor, NY
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