[Bioperl-l] UCSC database -> GFF

Jason Stajich jason at cgt.duhs.duke.edu
Tue Jun 17 15:07:25 EDT 2003

Does core/scripts/Bio-DB-GFF/load_ucsc.pl work for you?

On Tue, 17 Jun 2003, Paul Edlefsen wrote:

> The Generic Genome Browser comes with many helpful scripts for
> converting various data sources into GFF format.  I am wondering if
> anyone in the bioperl community has written one for the UCSC data, as is
> available at ftp://genome.cse.ucsc.edu/goldenPath/10april2003/database
> and described at http://genome.ucsc.edu/goldenPath/gbdDescriptions.html
> -- I noticed that  Allen Day wrote some handy aggregators for that data
> such as Bio::DB::GFF::ucsc_genscan, so I wanted to check before I start
> writing Generic-Genome-Browser/bin/process_ucsc.PLS.
> Thanks,
>   :Paul

Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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