[Bioperl-l] UCSC database -> GFF

Paul Edlefsen pedlefsen at systemsbiology.org
Tue Jun 17 11:57:51 EDT 2003

The Generic Genome Browser comes with many helpful scripts for 
converting various data sources into GFF format.  I am wondering if 
anyone in the bioperl community has written one for the UCSC data, as is 
available at ftp://genome.cse.ucsc.edu/goldenPath/10april2003/database 
and described at http://genome.ucsc.edu/goldenPath/gbdDescriptions.html 
-- I noticed that  Allen Day wrote some handy aggregators for that data 
such as Bio::DB::GFF::ucsc_genscan, so I wanted to check before I start 
writing Generic-Genome-Browser/bin/process_ucsc.PLS.



|    o-o     Paul T. Edlefsen
|    o---o   Computational Biologist
|  o----o    mailto:paul at systemsbiology.org
| O----O     Institute for Systems Biology
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