[Bioperl-l] get_Seq_by_acc() in Bio::DB::GeneBank failed
jun hu
junhu54 at hotmail.com
Fri Jun 13 18:27:45 EDT 2003
Hi, Eveyone,
I just downloaded and installed bioperl on my linux 9 machine, after that, I
tried test 1 to 22 of the bptutorial.pl. All test run fine except the test
11, the remote db access. I also tried the getGeneBank.pl script , the same
error happened.
Error message
------------- EXCEPTION -------------
MSG: acc does not exist
STACK Bio::DB::WebDBSeqI::get_Seq_by_acc
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/WebDBSeqI.pm:176
The debug is also tried, seems I never get anything from the buffer or
readline ...
I am wondering where or not the firewall is an issue? But I can use NCBI web
site to find the gene that I am fetching by bioperl ...
Does anyone have any idea about this problem?
Jun Hu
UMDNJ
_________________________________________________________________
MSN 8 with e-mail virus protection service: 2 months FREE*
http://join.msn.com/?page=features/virus
More information about the Bioperl-l
mailing list