[Bioperl-l] How to get refseq sequence object?

[Jason Stajich]

use Bio::DB::RefSeq;
get_Seq_by_acc('XP_110831.2')

Note this queries a refseq db at EBI not NCBI so it can be out of date at
times.

-j
On Fri, 13 Jun 2003, Jack Chen wrote:

> Hi,
>
> I have a refseq number: ref|XP_110831.2|, what function I should use to
> retrieve the sequence object remotely from the NCBI? I have tried all
> three functions: get_Seq_by_version, get_Seq_by_gi, and get_Seq_by_acc.
>
> Thanks,
>
> Jack
>
> +-----O----------------------------------------+
> |    o-o     Jack Chen, Stein Laboratory       |
> |    o---o   Cold Spring Harbor Laboratory     |
> |  o----o    1 Bungtown Road                   |
> | O----O     Cold Spring Harbor, NY, 11724     |
> | 0--o       Tel: 1 516 367 8394               |
> |   O        Website: http://www.wormbase.org  |
> |  o-o       e-mail: chenn at cshl.org            |
> +-o---o----------------------------------------+
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu