[Bioperl-l] Re:Smith waterman Alignment

[M K. Govind]

Hi all,

I am trying to align 2 sequences using the smithwaterman alignment 
and i get the following error. Could you please elaborate more on 
this.

****************************************************************
Warning Error
         In full dc program, passed bad indices, indices passed 
were -1:-1[-1]
to 1324:961[1]

Warning Error
         In recaluclating PackAln with state INSERT, from 
[476,959,3], got a
bad source state. Error!
Warning Error
         Between state [848,3,3] and [1324,962,1] got no labels... 
labelling
as UNKNOWN
Warning Error
         In full dc program, passed bad indices, indices passed 
were -1:-1[-1]
to 1324:961[1]

Warning Error
         In recaluclating PackAln with state INSERT, from 
[476,959,3], got a
bad source state. Error!
Warning Error
         Between state [848,3,3] and [1324,962,1] got no labels... 
labelling
as UNKNOWN

**********************************************************************

Thanks in advance

-Govind
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