[Bioperl-l] Fixed the previously reported BLAST query length issue

Matthew Vaughn vaughn at cshl.org
Fri Jun 6 15:02:00 EDT 2003

If anyone cares to try it out, I fixed the bug I mentioned in my 
previous email. The problem is in the module Bio::SearchIO::blast.pm in 
the method next_result.  Change the following line

while( defined ($_) && $_ !~ /^\s+$/ ) {


while( defined ($_) && $_ !~ /^Database/ ) {

This seems to fix the issue without breaking other functionality.



Matthew W. Vaughn, Ph.D.
Cold Spring Harbor Laboratory
Delbruck Laboratory / Martienssen Group
1 Bungtown Road
Cold Spring Harbor, NY 11724

phone: (516) 422-4128

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