[Bioperl-l] Finding subject length with BPlite

[nkuipers]

Would length( $hsp->sbjctSeq ) do the trick for you?  Worth a shot perhaps...

nathanael


>===== Original Message From "Susan J. Miller" <sjmiller@u.arizona.edu> =====
>What is the recommended way to pull the subject length (not match
>length) out of a BLAST report with BPlite?  There used to be a
>$sbjct->length() method but it no longer exists. (I know SearchIO will
>do it but would rather not rewrite existing scripts).
>
>--
>Thanks,
>-susan
>
>Susan J. Miller
>Biotechnology Computing Facility
>Arizona Research Laboratories
>Bio West 228
>University of Arizona
>Tucson, AZ  85721
>(520) 626-2597
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