[Bioperl-l] Re: [Bioperl-guts-l] bioperl commit

Aaron J Mackey amackey at pcbi.upenn.edu
Mon Dec 15 08:01:32 EST 2003


$patch =~ s/E<lt>/E<gt>/g;

On Mon, 15 Dec 2003, Heikki Lehvaslaiho wrote:

> 
> heikki
> Mon Dec 15 06:50:38 EST 2003
> Update of /home/repository/bioperl/bioperl-live/Bio/Graphics
> In directory pub.open-bio.org:/tmp/cvs-serv26698/Bio/Graphics
> 
> Modified Files:
> 	Glyph.pm Panel.pm 
> Log Message:
> pod fixes
> 
> bioperl-live/Bio/Graphics Glyph.pm,1.55,1.56 Panel.pm,1.66,1.67
> ===================================================================
> RCS file: /home/repository/bioperl/bioperl-live/Bio/Graphics/Glyph.pm,v
> retrieving revision 1.55
> retrieving revision 1.56
> diff -u -r1.55 -r1.56
> --- /home/repository/bioperl/bioperl-live/Bio/Graphics/Glyph.pm	2003/12/13 17:17:50	1.55
> +++ /home/repository/bioperl/bioperl-live/Bio/Graphics/Glyph.pm	2003/12/15 11:50:38	1.56
> @@ -1127,7 +1127,7 @@
>  This is similar to add_feature(), but the list of features is treated
>  as a group and can be configured as a set.
>  
> -=item $glyph->E<gt>finished
> +=item $glyph-E<gt>finished
>  
>  When you are finished with a glyph, you can call its finished() method
>  in order to break cycles that would otherwise cause memory leaks.
> 
> ===================================================================
> RCS file: /home/repository/bioperl/bioperl-live/Bio/Graphics/Panel.pm,v
> retrieving revision 1.66
> retrieving revision 1.67
> diff -u -r1.66 -r1.67
> --- /home/repository/bioperl/bioperl-live/Bio/Graphics/Panel.pm	2003/12/13 17:17:50	1.66
> +++ /home/repository/bioperl/bioperl-live/Bio/Graphics/Panel.pm	2003/12/15 11:50:38	1.67
> @@ -1264,7 +1264,7 @@
>    $width = gdMediumBoldFont->width * length($longest_key) +3;
>  
>  In order to obtain scalable vector graphics (SVG) output, you should
> -pass new() the -image_class=>'GD::SVG' parameter. This will cause
> +pass new() the -image_class=E<lt>'GD::SVG' parameter. This will cause
>  Bio::Graphics::Panel to load the optional GD::SVG module. See the gd()
>  and svg() methods below for additional information.
>  
> @@ -1495,7 +1495,7 @@
>  height() methods first to ensure that the image has sufficient
>  dimensions.
>  
> -If you passed new() the -image_class=>'GD::SVG' parameter, the gd() method
> +If you passed new() the -image_class=E<lt>'GD::SVG' parameter, the gd() method
>  returns a GD::SVG::Image object. This object overrides GD::Image
>  methods in order to generate SVG output. It behaves exactly as
>  described for GD::Image objects with one exception: it implements and
> 
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> 



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